New educational standards include significant changes in the structure, content, aims and objectives of education of Agroengineering specialists. According to this the research of the role of project preparation in the professional competence formation of future specialists in agroengeneering was conducted. The results of the investigation the preparatory stages that are based on the systematic approach, which inclines four main components for making an agroengeneer as a specialist be ready for project activity, are represented. Beginning at the first preparatory course the improvement of educational pedagogical technologies should be directed to the target integration of subjects with providing growth of the results at each stage – physics and mathematics, general and special. The role of physical and mathematical education and formation of general professional competence of the future agroengineers, activity and the level of teachers’ influence on the project training of students was investigated.